MethCGI

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MethCGI is a tool to predict the methylation status of CpG islands in the human brain, developed on the data from human brain DNA using support vector machine(SVM).

Sequence Name:

Sequence:

The length of the window to extract CpG island fragments 


An example:

>sample1		976
gctggaggccactatcctaaggaaattaacacaggtacagaaatcttcaacaagggggcatttcataaagtaaaattttggattcaaattttactaatat
tttggctgtagattacacacagttcgtgcaatagctattccctaattactatactttttttttttttttttttttgagacggagtctcgctctgtcgccc
aggctggagtgcagtggcgcgatctcggctcactgcaagctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctggcgcccgcc
accacgcccggctaattttttgtattttcagtagaaacggggtttcaccgtgttagccaggatggtctcgatctcctgacctcgtgatccgccctcctcg
gcctcccaaagtgctgggattacaggcgtgagccaccgcgctttcttaaggagtaaggaaacttgaaatatgaggcggtgcgctggtagaggcaccgcac
acaggcatcgtttcacacaactgttacttaggttttccaatagtaaagttctaagtggatgaatgaacacaagccgcggattttagggaaactgggaaaa
ctgccctgaggtacagctgcagacgctgcagctctagaccgcggggtccgggctcaggcagcccttagcgcccaggctgggtccggctgtcaccaccccg
agcgtcctgcggcagcctcccttgcacgaaaagccttcggtgctgcagggctggggaatgctgacacccagtccgtgcccagctggagggcaagggagga
cacctggggtgggtgccgacccccgcaggtcctgtctcagcccttccagtccggggcgcggagccagggcgctggaacacaagggacacgcacatgctcc
cacacccacacacacatgcacccactgcctgagggcggtggtggtgtcagcgtccggggccgggggagggggtgtc