Email: wellgoo at gmail dot com

    Phone (Lab): +86 10 62794294-866

  Research Interests (Computational Systems Biology):

    1) microRNAs and other small RNAs

    2) The responses of endothelial cells in inflammation & angiogenesis

    3) The regulatory/control principles of biological molecular networks

  Journal Publications (sorted by date):

    Jin Gu. Brief review: frontiers in the computational studies of gene regulations.
        Front Electr Electron Eng China 2008, 3(3):251-259.
        [Abstract] [Full Text] [Manuscript]

    Xiaowo Wang, Jin Gu, Michael Zhang, Yanda Li. Identification of phylogenetically
        conserved microRNA cis-regulatory elements across 12 Drosophila species.
        Bioinformatics 2008, 24(2):165-171. [Abstract] [Free Full Text]

    Tao He, Fei Li, Jin Gu, Ruiqiang Li, Fei Li. Computational Identification of 99
        Invertebrate MicroRNAs with Comparative Genomics.
        Tsinghua Science and Technology 2008, 13(4):425-432. [Abstract] [Full Text]

    Jin Gu, Hu Fu, Xuegong Zhang, Yanda Li. Identifications of conserved 7-mers
        in 3'-UTRs and microRNAs in Drosophila. BMC Bioinformatics 2007, 8:32.
        [Abstract] [Free Full Text] [Software]

    Jin Gu*, Tao He*, Yunfei Pei, Fei Li, Jing Zhang, Xiaowo Wang, Xuegong Zhang,
        Yanda Li. Primary Transcripts and Expressions of Mammal Intergenic MicroRNAs
        Detected by Mapping ESTs to Their Flanking Sequences.
        Mamm Genome 2006, 17(10):1033-1041.
        [Abstract] [Full Text] [Supplementary Materials]

    Xiaowo Wang*, Jing Zhang*, Fei Li, Jin Gu, Tao He, Xuegong Zhang, Yanda Li.
        MicroRNA Identification Based on Sequence and Structure Alignment.
        Bioinformatics 2005, 21(18):3610-3614. [Abstract] [Free Full Text]

  Conference Publications (sorted by date):

    Jin Gu. A multiple-instance scoring method to predict tissue-specific cis-regulatory
        motifs and regions. The IAENG International Conference on Bioinformatics (ICB'10),
        Accepted. [Manuscript] [Nature_Precedings]

    Jin Gu, Shao Li, Yang Chen, Yanda Li. Integrative computational identifications of
        the signaling pathway network related to TNF-alpha stimulus in vascular
        endothelial cells. Proceedings in 2009 International Joint Conference on
        Bioinformatics, Systems Biology and Intelligent Computing (IJCBS'09) 2009, 422-427.
        (Full paper & Oral Presentation) [Abstract] [Manuscript]

  Tools and Databases:

        PCS: de novo k-mer analysis package (Latest version 1.5) (Download)

        Mamm miR-EST: the ESTs mapped to the flanking sequences of miRNAs (Download)