Top Banner  

















Accepted papers

The conference proceedings (Lecture Notes in Computer Science, Volume 7821, 2013) is now online. You can find information about it at or access the online version at A subscription to Springer products is required in order for you to download full text.

ID Authors and Title
2 Evan Senter, Saad Sheikh, Ivan Dotu, Yann Ponty and Peter Clote
  Using the Fast Fourier Transform to accelerate the computational search for RNA conformational switches
5 Dong Xu, Hua Li and Yang Zhang
  Fast and Accurate Calculation of Protein Depth by Euclidean Distance Transform
17 Mohammad Javad Sadeh, Giusi Moffa and Rainer Spang
  Considering Unknown Unknowns - Reconstruction of Non-confoundable Causal Relations in Biological Networks
24 Yufeng Wu
  An Algorithm for Constructing Parsimonious Hybridization Networks with Multiple Phylogenetic Trees
30 Dong-Yeon Cho and Teresa Przytycka
  Dissecting cancer heterogeneity with a probabilistic genotype-phenotype model
31 Mingxun Wang and Nuno Bandeira
  Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance
32 Zhizhuo Zhang, Guoliang Li, Kim-Chuan Toh and Wing-Kin Sung
  Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data
35 Roy Ronen, Nitin Udpa, Eran Halperin and Vineet Bafna
  Learning Natural Selection from the Site Frequency Spectrum
42 Jesper Jansson, Chuanqi Shen and Wing-Kin Sung
  An Optimal Algorithm for Building the Majority Rule Consensus Tree
43 Itamar Eskin, Farhad Hormozdiari, Lucia Conde, Chris Skibola, Jacques Riby, Eleazar Eskin and Eran Halperin
  eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data
49 Kriti Puniyani and Eric Xing
  NP-MuScL: Unsupervised global prediction of interaction networks from multiple data sources
53 Emrah Kostem and Eleazar Eskin
  Efficiently Identifying Significant Associations in Genome-wide Association Studies
56 Dan He, Zhanyong Wang, Laxmi Parida and Eleazar Eskin
  IPED: Inheritance Path based Pedigree Reconstruction Algorithm using Genotype Data
62 Ting Wang, Michael Stevens, Jeffrey Cheng, Mingchao Xie and Joseph Costello
  MethylCRF, an Algorithm for Estimating Absolute Methylation Levels at Single CpG Resolution from Methylation Enrichment and Restriction Enzyme Sequencing Methods
72 Alina Munteanu and Raluca Gordan
  Distinguishing between genomic regions bound by paralogous transcription factors
74 Xiaowen Liu, Shawna Hengel, Si Wu, Nikola Tolic, Ljiljana Pasa-Tolic and Pavel Pevzner
  Identification of proteins with multiple post-translational modifications using top-down tandem mass spectra
75 Shijian Chen, Anqi Wang and Lei Li
  SEME: A fast mapper of Illumina sequencing reads with statistical evaluation
80 Ngoc Hieu Tran, Kwok Pui Choi and Louxin Zhang
  Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data
92 Ali A Faruqi, William A Bryant and John W Pinney
  Analysis of metabolic evolution in bacteria using whole-genome metabolic models
96 Kyowon Jeong, Sangtae Kim and Pavel Pevzner
  UniNovo : a universal tool for de novo peptide sequencing
105 Sebastian Will, Christina Schmiedl, Milad Miladi, Mathias Mohl and Rolf Backofen
  SPARSE: Quadratic Time Simultaneous Alignment and Folding of RNAs Without Sequence-Based Heuristics
110 Fei Guo, Shuai Cheng Li, Wenji Ma and Lusheng Wang
  Detecting Protein Conformational Changes in Interactions via Scaling Known Structures
112 Vladimir Reinharz, Yann Ponty and Jerume Waldispuhl
  A linear inside-outside algorithm for correcting sequencing errors in structured RNA sequences W
115 Mukul S. Bansal, Eric J Alm and Manolis Kellis
  Reconciliation Revisited: Handling Multiple Optima when Reconciling with Duplication, Transfer, and Loss
120 Jesse Rodriguez, Serafim Batzoglou and Sivan Bercovici
  An Accurate Method for Inferring Relatedness in Large Datasets of Unphased Genotypes via an Embedded Likelihood-Ratio Test
121 Fabio Vandin, Alexandra Papoutsaki, Ben Raphael and Eli Upfal
  Genome-Wide Survival Analysis of Somatic Mutations in Cancer
127 Raheleh Salari, Syed Shayon Saleh, Dorna Kashef-Haghighi, David Khavari, Daniel E Newburger, Robert E West, Arend Sidow and Serafim Batzoglou
  Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery
133 Christopher Reeder and David Gifford
  High Resolution Modeling of Chromatin Interactions
146 Layla Oesper, Ahmad Mahmoody and Ben Raphael
  Estimating Tumor Purity and Cancer Subpopulations from High-Throughput DNA Sequencing Data
147 Chittaranjan Tripathy, Anthony Yan, Pei Zhou and Bruce Donald
  Extracting Structural Information from Residual Chemical Shift Anisotropy: Analytic Solutions for Peptide Plane Orientations and Applications to Determine Protein Structure
160 Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey Gurevich, Anton Korobeynikov, Alla Lapidus, Andrey Prjibelsky, Alexey Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey McLean, Roger Lasken, Glenn Tesler, Max Alekseyev and Pavel Pevzner
  Assembling Genomes and Multigenomes from Highly Chimeric Reads
178 Shuigeng Zhou
  Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties

  bottom banner  
Home Program Travel Registration Committees Contact Accommodation Travel & Visa Program About RECOMB Accommodation Key Dates General Information Conference Venue Keynote Speakers Registration Committees Submission Call for Posters Call for Papers Travel Fellowships About Beijing Sponsors Contact Stellite Workshop