DEGseq

An R package for Identifying Differentially Expressed Genes from RNA-seq data

This R package provides methods to identify differentially expressed genes from RNA-seq data.

Authors Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, and Xuegong Zhang
Maintainer Likun Wang <wanglikun at tsinghua.edu.cn>
MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST / Department of Automation, Tsinghua University, Beijing 100084, China.

This package now is available at bioconductor (>= 2.5) DEGseq@Bioconductor.

FAQ

Q: R crashed after loading DEGseq in Mac. How to fix it?

A: This is caused by importing Tcl/Tk libraries. Please refer to the words in bold in the webpage, and you may need to download and install an extra package: tcltk-8.5.5-x11.dmg (see also here). To run R in console launched from a terminal is an alternative way to apply DEGseq without installing the extra package.

Feedback

Comments, suggestions, questions, bug reports, etc, are all welcome. For enquiries, please send emails to wanglikun at tsinghua.edu.cn.

Citation

If you use the package, please cite us in the following way:

Likun Wang, Zhixing Feng, Xi Wang, Xiaowo Wang, and Xuegong Zhang, DEGseq: an R package for identifying differentially expressed genes from RNA-seq data, Bioinformatics, 1 January 2010; 26: 136 - 138. (Abstract).

Anyone can use the source codes and executable files of DEGseq free of charge for non-commercial use. Valid XHTML 1.0 Strict Valid CSS!