Nu-OSCAR (Nucleosome-Occupancy Study for Cis-elments Accurate Recognition) is a program that can be used to identify binding sites of known transcription factors, which further incorporates nucleosome occupancy around sites on promoter regions, thereby improvind the accuracy of predition. The derivation of the the algorithm is based on a biophysical view of interactions between protein factors and nucleosome DNA. For more details about Nu-OSCAR, please see the [manuscript of Nu-oscar] and [Supplementary Tables].
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