guipeng
Guipeng Li   李贵鹏

PhD. student
Department of Automation, Tsinghua University
Bioinformatics Division and Center for System and Synthetic Biology, TNLIST, Beijing, 100084, China

Email: ligp12(AT)mails.tsinghua.edu.cn


Research Interest

I have broad interests in Data Science and Computational Biology. My current interest focus on the 3D Genome study. Specifically, I develop novel computational methods and tools to analyze and explore the chromatin interaction big data and apply these methods in real datasets to gain insight into biological mechanism. The methodologies include but not limit to advanced statistics, optimization algorithms and machine learning.

Education

 2008.09~2012.07    B.S.

  • Department of Mathematics and Applied Mathematics, School of Sciences.
    South China University of Technology, Guangzhou.
    Major: Mathematics and Applied Mathematics

 2015.10~2016.03    Visiting Student Researcher.

  • Department of Genetics,
    Stanford University School of Medicine.
    Supervisor: Prof. Michael Snyder

 2012.09~Current    Ph.D. Student

  • Department of Automation, Tsinghua University.
    Bioinformatics Division & Center for System and Synthetic Biology, Tsinghua National Laboratory for Information Science & Technology, Beijing
    Supervisor: Prof. Michael Zhang & Dr. Yang Chen

Publications

  • Li, G., Chen, Y., Snyder, M.P. and Zhang, M.Q. (2016) ChIA-PET2: a versatile and flexible pipeline for ChIA-PET data analysis. Nucleic acids research. doi:10.1093/nar/gkw809
  • He, C.*, Li, G.*, Nadhir, D.M., Chen, Y., Wang, X. and Zhang, M.Q. (2016) Advances in computational ChIA-PET data analysis. Quantitative biology, 4, 217-225. doi:10.1007/s40484-016-0080-3
  • Djekidel, M. N., Liang, Z., Wang, Q., Hu, Z., Li, G., Chen, Y., & Zhang, M. Q. (2015). 3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process. Genome Biol, 16, 288. doi: 10.1186/s13059-015-0851-6
  • Li, G., Li, M., Zhang, Y., Wang, D., Li, R., Guimera, R., . . . Zhang, M. Q. (2014). ModuleRole: A Tool for Modulization, Role Determination and Visualization in Protein-Protein Interaction Networks. PLoS One, 9(5), e94608. doi: 10.1371/journal.pone.0094608
  • Updated on Sep. 28, 2016